Files in rpact
Confirmatory Adaptive Clinical Trial Design and Analysis

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/class_summary.R R/f_design_plan_utilities.R R/f_analysis_multiarm_means.R R/f_simulation_enrichment_means.R R/f_simulation_multiarm_rates.R R/class_performance_score.R R/class_design.R R/class_dictionary.R R/class_event_probabilities.R R/f_analysis_multiarm.R R/f_simulation_base_survival.R R/f_core_plot.R R/f_core_constants.R R/class_core_parameter_set.R R/f_core_utilities.R R/class_simulation_results.R R/f_simulation_base_means.R R/f_design_group_sequential.R R/f_analysis_utilities.R R/f_analysis_enrichment_means.R R/f_design_plan_rates.R R/data.R R/f_analysis_enrichment_survival.R R/f_simulation_multiarm_means.R R/f_design_plan_survival.R R/pkgname.R R/class_design_power_and_asn.R R/class_analysis_results.R R/f_object_r_code.R R/class_analysis_dataset.R R/f_design_plan_count_data.R R/f_design_fisher_combination_test.R R/f_analysis_base_means.R R/class_analysis_stage_results.R R/f_analysis_base_survival.R R/f_simulation_base_rates.R R/f_analysis_base.R R/class_time.R R/f_simulation_plot.R R/f_analysis_enrichment_rates.R R/f_logger.R R/f_simulation_multiarm_survival.R R/f_parameter_set_utilities.R R/class_design_set.R R/f_design_plan_plot.R R/f_simulation_performance_score.R R/f_simulation_utilities.R R/f_analysis_base_rates.R R/f_analysis_multiarm_rates.R R/f_quality_assurance.R R/f_core_output_formats.R R/f_design_plan_means.R R/f_simulation_enrichment_survival.R R/class_core_plot_settings.R R/f_core_assertions.R R/f_simulation_calc_subjects_function.R R/f_simulation_enrichment_rates.R R/f_simulation_enrichment.R R/parameter_descriptions.R R/class_design_plan.R R/f_design_general_utilities.R R/f_simulation_multiarm.R R/f_analysis_multiarm_survival.R R/f_analysis_enrichment.R R/f_as251.R
src/rpact_types.h
src/f_simulation_base_means.cpp
src/RcppExports.cpp
src/f_simulation_base_rates.cpp
src/f_utilities.cpp
src/f_simulation_survival_utilities.h
src/f_utilities.h
src/f_count_data_estimation.cpp
src/f_assertions.cpp
src/f_design_group_sequential.cpp
src/f_as251_fortran.f
src/f_simulation_survival_utilities.cpp
src/f_simulation_base_survival.cpp
src/f_design_fisher_combination_test.cpp
src/f_as251.cpp
src/f_assertions.h
inst/WORDLIST
inst/doc/rpact_getting_started.html
inst/doc/rpact_getting_started.Rmd inst/doc/rpact_getting_started.R
inst/extdata/dataset_survival_multi-arm.csv
inst/extdata/dataset_rates.csv
inst/extdata/dataset_means_multi-arm.csv
inst/extdata/datasets_rates.csv
inst/extdata/dataset_rates_multi-arm.csv
inst/tests/testthat.R inst/tests/testthat/test-rpact.R
build/vignette.rds
build/partial.rdb
tests/testthat.R tests/testthat/test-class_core_plot_settings.R tests/testthat/helper-f_core_assertions.R tests/testthat/test-f_analysis_multiarm_survival.R tests/testthat/test-f_design_plan_rates.R tests/testthat/test-f_core_assertions.R tests/testthat/test-f_simulation_plot.R tests/testthat/test-f_design_plan_means.R tests/testthat/test-f_logger.R tests/testthat/test-f_simulation_base_rates.R tests/testthat/helper-f_analysis_base_survival.R tests/testthat/test-f_design_group_sequential_beta_spending.R tests/testthat/helper-f_core_output_formats.R tests/testthat/test-f_analysis_utilities.R tests/testthat/test-f_simulation_multiarm_rates.R tests/testthat/test-f_simulation_base_survival.R tests/testthat/test-f_analysis_base_means.R tests/testthat/test-f_analysis_enrichment_survival.R tests/testthat/test-f_analysis_multiarm_means.R tests/testthat/test-f_design_utilities.R tests/testthat/test-f_design_plan_plot.R tests/testthat/test-f_analysis_base_rates.R tests/testthat/test-class_summary.R tests/testthat/test-f_simulation_multiarm_means.R tests/testthat/test-f_design_group_sequential.R tests/testthat/test-f_quality_assurance.R tests/testthat/test-f_simulation_base_means.R tests/testthat/test-f_simulation_performance_score.R tests/testthat/helper-f_core_utilities.R tests/testthat/test-f_core_plot.R tests/testthat/test-f_design_plan_survival.R tests/testthat/test-f_simulation_enrichment_means.R tests/testthat/test-f_analysis_base_survival.R tests/testthat/test-generic_functions.R tests/testthat/test-f_design_fisher_combination_test.R tests/testthat/test-f_simulation_enrichment_rates.R tests/testthat/test-f_design_plan_count_data.R tests/testthat/test-f_analysis_input_validation.R tests/testthat/test-class_design_plan.R tests/testthat/test-f_simulation_calc_subjects_function.R tests/testthat/Rplots.pdf tests/testthat/helper-f_analysis_base_rates.R tests/testthat/test-f_parameter_set_utilities.R tests/testthat/test-f_simulation_multiarm_survival.R tests/testthat/test-f_as251.R tests/testthat/helper-class_analysis_dataset.R tests/testthat/test-pkgname.R tests/testthat/test-f_analysis_multiarm_rates.R tests/testthat/test-class_simulation_results.R tests/testthat/helper-f_analysis_base_means.R tests/testthat/test-class_dictionary.R tests/testthat/test-f_simulation_enrichment_survival.R tests/testthat/test-class_time.R tests/testthat/test-f_analysis_enrichment_rates.R tests/testthat/test-f_simulation_utilities.R tests/testthat/test-f_core_output_formats.R tests/testthat/test-f_analysis_enrichment_means.R tests/testthat/test-f_core_utilities.R tests/testthat/test-class_analysis_dataset.R tests/testthat/test-class_design_set.R vignettes/rpact_getting_started.Rmd
data/dataEnrichmentSurvivalStratified.RData
data/dataMultiArmRates.RData
data/dataMultiArmSurvival.RData
data/dataEnrichmentMeansStratified.RData
data/dataMultiArmMeans.RData
data/rawDataTwoArmNormal.RData
data/dataMeans.RData
data/dataEnrichmentMeans.RData
data/dataEnrichmentRatesStratified.RData
data/dataEnrichmentRates.RData
data/dataRates.RData
data/dataSurvival.RData
data/dataEnrichmentSurvival.RData
man/knit_print.SummaryFactory.Rd man/summary.ParameterSet.Rd man/dataEnrichmentSurvivalStratified.Rd man/SimulationResultsMeans.Rd man/getSimulationMultiArmRates.Rd man/param_hazardRatio.Rd man/EventProbabilities.Rd man/getDesignInverseNormal.Rd man/DatasetMeans.Rd man/AnalysisResultsEnrichment.Rd man/param_dropoutRate1.Rd man/param_conditionalPower.Rd man/as.data.frame.TrialDesign.Rd man/plot.TrialDesignSet.Rd man/param_design_with_default.Rd man/getEventProbabilities.Rd man/names.StageResults.Rd man/knit_print.ParameterSet.Rd man/names.SimulationResults.Rd man/PlotSettings.Rd man/param_nMax.Rd man/StageResultsMultiArmSurvival.Rd man/param_allocationRatioPlanned_sampleSize.Rd man/t-FieldSet-method.Rd man/plot.ParameterSet.Rd man/AnalysisResultsMultiHypotheses.Rd man/dataMultiArmRates.Rd man/getAccrualTime.Rd man/SimulationResultsMultiArmSurvival.Rd man/ConditionalPowerResultsRates.Rd man/getLongFormat.Rd man/param_threshold.Rd man/param_median1.Rd man/getPowerRates.Rd 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man/names.AnalysisResults.Rd man/dataMeans.Rd man/param_minNumberOfSubjectsPerStage.Rd man/getParameterName.Rd man/mvnprd.Rd man/getPowerSurvival.Rd man/SimulationResultsRates.Rd man/param_maxNumberOfEventsPerStage.Rd man/writeDataset.Rd man/kable.Rd man/ConditionalPowerResultsSurvival.Rd man/param_dataInput.Rd man/getSimulationEnrichmentSurvival.Rd man/getWideFormat.Rd man/PerformanceScore.Rd man/param_typeOfShape.Rd man/TrialDesignPlanSurvival.Rd man/param_populations.Rd man/param_successCriterion.Rd man/names.TrialDesignSet.Rd man/Dataset.Rd man/param_varianceOption.Rd man/param_calcEventsFunction.Rd man/DatasetRates.Rd man/dataSurvival.Rd man/kable.ParameterSet.Rd man/param_allocationRatioPlanned.Rd man/getSampleSizeMeans.Rd man/param_pi1_survival.Rd man/param_maxNumberOfSubjectsPerStage.Rd man/SimulationResults.Rd man/dataMultiArmMeans.Rd man/param_stDevH1.Rd man/param_calcSubjectsFunction.Rd man/param_beta.Rd man/getDesignConditionalDunnett.Rd man/StageResultsSurvival.Rd man/getSampleSizeCounts.Rd man/param_fixedExposureTime_counts.Rd man/ConditionalPowerResults.Rd man/readDataset.Rd man/TrialDesignGroupSequential.Rd man/ConditionalPowerResultsEnrichmentRates.Rd man/mvstud.Rd man/getClosedConditionalDunnettTestResults.Rd man/param_typeOfSelection.Rd man/TrialDesignFisher.Rd man/print.ParameterSet.Rd man/getAvailablePlotTypes.Rd man/getDesignGroupSequential.Rd man/param_normalApproximation.Rd man/ConditionalPowerResultsMeans.Rd man/length.TrialDesignSet.Rd man/dataEnrichmentSurvival.Rd man/utilitiesForSurvivalTrials.Rd man/param_alternative.Rd man/TrialDesignPlanCountData.Rd man/print.FieldSet.Rd man/param_maxNumberOfSubjects.Rd man/param_informationEpsilon.Rd man/getObjectRCode.Rd man/rawDataTwoArmNormal.Rd man/param_overdispersion_counts.Rd man/getConditionalRejectionProbabilities.Rd man/plot.TrialDesign.Rd man/getPowerAndAverageSampleNumber.Rd man/TrialDesignPlan.Rd man/as251Normal.Rd man/param_stratifiedAnalysis.Rd man/ParameterSet.Rd man/param_typeOfComputation.Rd man/as.matrix.FieldSet.Rd man/getTestActions.Rd man/param_seed.Rd man/AnalysisResultsMultiArm.Rd man/param_maxInformation.Rd man/dataEnrichmentRates.Rd man/param_sided.Rd man/getClosedCombinationTestResults.Rd man/utilitiesForPiecewiseExponentialDistribution.Rd man/param_epsilonValue.Rd man/TrialDesignInverseNormal.Rd man/getLogLevel.Rd man/param_intersectionTest_MultiArm.Rd man/TrialDesignPlanRates.Rd man/param_niceColumnNamesEnabled.Rd man/as.data.frame.PowerAndAverageSampleNumberResult.Rd man/getSimulationEnrichmentMeans.Rd man/getObservedInformationRates.Rd man/SimulationResultsMultiArmRates.Rd man/print.SimulationResults.Rd man/TrialDesignCharacteristics.Rd man/AnalysisResultsEnrichmentInverseNormal.Rd man/as.data.frame.AnalysisResults.Rd man/as.data.frame.StageResults.Rd man/param_selectArmsFunction.Rd man/plot.Dataset.Rd man/PowerAndAverageSampleNumberResult.Rd man/param_slope.Rd man/sub-TrialDesignSet-method.Rd man/getSimulationSurvival.Rd 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man/param_typeOfDesign.Rd man/AnalysisResultsEnrichmentFisher.Rd man/param_lambda1.Rd man/getRepeatedConfidenceIntervals.Rd man/getData.Rd man/as.data.frame.ParameterSet.Rd man/plot.SimulationResults.Rd man/param_maxNumberOfSubjects_survival.Rd man/getSimulationEnrichmentRates.Rd man/summary.AnalysisResults.Rd man/setLogLevel.Rd man/AnalysisResultsMultiArmFisher-class.Rd man/TrialDesignSet.Rd man/param_effectMatrix.Rd man/TrialDesignConditionalDunnett.Rd man/param_activeArms.Rd man/param_alpha.Rd man/param_legendPosition.Rd man/param_median2.Rd man/AnalysisResultsGroupSequential.Rd man/StageResultsEnrichmentMeans.Rd man/getPowerMeans.Rd man/param_effectMeasure.Rd man/getDataset.Rd man/rpact.Rd man/param_theta.Rd man/testPackage.Rd man/SimulationResultsMultiArmMeans.Rd man/param_adaptations.Rd man/param_pi1_rates.Rd man/param_accrualTime.Rd man/dataEnrichmentMeansStratified.Rd man/param_thetaH1.Rd man/getPlotSettings.Rd man/test_plan_section.Rd man/param_pi2_survival.Rd man/StageResultsEnrichmentRates.Rd man/StageResultsMultiArmRates.Rd man/plot.EventProbabilities.Rd man/param_groups.Rd man/getAnalysisResults.Rd man/getFinalPValue.Rd man/param_kappa.Rd man/param_conditionalPowerSimulation.Rd man/param_tolerance.Rd man/param_digits.Rd man/AnalysisResults.Rd man/FieldSet.Rd man/as.data.frame.TrialDesignPlan.Rd man/getLambdaStepFunction.Rd man/param_three_dots_plot.Rd man/param_maxNumberOfIterations.Rd man/param_intersectionTest_Enrichment.Rd man/setOutputFormat.Rd man/StageResultsMeans.Rd man/param_dropoutTime.Rd man/roxygen/meta.R
rpact documentation built on May 29, 2024, 11:20 a.m.