API for seqminer
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R
| Global functions | |
|---|---|
| .onAttach | Source code |
| [.PlinkFile | Man page |
| `[.PlinkFile` | Source code |
| addJob | Man page Source code |
| annotateGene | Man page Source code |
| annotatePlain | Man page Source code |
| annotateVcf | Man page Source code |
| createSingleChromosomeBCFIndex | Man page Source code |
| createSingleChromosomeVCFIndex | Man page Source code |
| download.annotation.resource | Man page Source code |
| getCovPair | Man page Source code |
| getRefBase | Man page Source code |
| hasIndex | Man page Source code |
| isDirWritable | Man page Source code |
| isInRange | Man page Source code |
| isTabixRange | Man page Source code |
| isURL | Man page Source code |
| local.file.exists | Source code |
| makeAnnotationParameter | Man page Source code |
| newJob | Man page Source code |
| newWorkflow | Man page Source code |
| openPlink | Man page Source code |
| readBGENToListByGene | Man page Source code |
| readBGENToListByRange | Man page Source code |
| readBGENToMatrixByGene | Man page Source code |
| readBGENToMatrixByRange | Man page Source code |
| readPlinkToMatrixByIndex | Man page Source code |
| readSingleChromosomeBCFToMatrixByRange | Man page Source code |
| readSingleChromosomeVCFToMatrixByRange | Man page Source code |
| readVCFToListByGene | Man page Source code |
| readVCFToListByRange | Man page Source code |
| readVCFToMatrixByGene | Man page Source code |
| readVCFToMatrixByRange | Man page Source code |
| rvmeta.readCovByRange | Man page Source code |
| rvmeta.readDataByGene | Man page Source code |
| rvmeta.readDataByRange | Man page |
| rvmeta.readNullModel | Man page Source code |
| rvmeta.readScoreByRange | Man page Source code |
| rvmeta.readSkewByRange | Man page Source code |
| rvmeta.writeCovData | Man page |
| rvmeta.writeScoreData | Man page |
| seqminer | Man page |
| seqminer-package | Man page |
| tabix.createIndex | Man page Source code |
| tabix.createIndex.meta | Man page Source code |
| tabix.createIndex.vcf | Man page Source code |
| tabix.read | Man page Source code |
| tabix.read.header | Man page Source code |
| tabix.read.table | Man page Source code |
| validateAnnotationParameter | Man page Source code |
| verifyFilename | Man page Source code |
| writeWorkflow | Man page Source code |
