CalcLL: wrapper for Fortran function to calculate total likelihood
In sequoia: Pedigree Inference from SNPs
CalcLL R Documentation
wrapper for Fortran function to calculate total likelihood
Description
function to be optimised
Usage
CalcLL(Er_hat, GenoM, Parents, DupsV)
Arguments
Er_hat
length 3 vector with genotyping error rates
GenoM
Genotype matrix
Parents
Pedigree, already converted to rownumbers in GenoM
DupsV
vector with duplicate samples, already converted to rownumbers
Value
the negative of the total log10-likelihood
sequoia documentation built on Sept. 8, 2023, 5:29 p.m.
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| CalcLL | R Documentation |
wrapper for Fortran function to calculate total likelihood
Description
function to be optimised
Usage
CalcLL(Er_hat, GenoM, Parents, DupsV)
Arguments
Er_hat |
length 3 vector with genotyping error rates |
GenoM |
Genotype matrix |
Parents |
Pedigree, already converted to rownumbers in GenoM |
DupsV |
vector with duplicate samples, already converted to rownumbers |
Value
the negative of the total log10-likelihood
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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