ErrPerSNP: wrapper for Fortran function to estimate error rate for each...
In sequoia: Pedigree Inference from SNPs
ErrPerSNP R Documentation
wrapper for Fortran function to estimate error rate for each SNP
Description
WARNING: not very precise, especially not for low error rates.
Usage
ErrPerSNP(Er_hat, GenoM, Parents, DupsV)
Arguments
Er_hat
length 3 vector with genotyping error rates
GenoM
Genotype matrix
Parents
Pedigree, already converted to rownumbers in GenoM
DupsV
vector with duplicate samples, already converted to rownumbers
Value
a matrix with 3 columns: for each SNP the probabilities (observed given
actual) hom|other hom, het|hom, and hom|het.
sequoia documentation built on Sept. 8, 2023, 5:29 p.m.
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| ErrPerSNP | R Documentation |
wrapper for Fortran function to estimate error rate for each SNP
Description
WARNING: not very precise, especially not for low error rates.
Usage
ErrPerSNP(Er_hat, GenoM, Parents, DupsV)
Arguments
Er_hat |
length 3 vector with genotyping error rates |
GenoM |
Genotype matrix |
Parents |
Pedigree, already converted to rownumbers in GenoM |
DupsV |
vector with duplicate samples, already converted to rownumbers |
Value
a matrix with 3 columns: for each SNP the probabilities (observed given actual) hom|other hom, het|hom, and hom|het.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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