PlotAgePrior: Plot Age Priors

In sequoia: Pedigree Inference from SNPs

Plot Age Priors

Description

Visualise the age-difference based prior probability ratios as a heatmap.

Usage

PlotAgePrior(AP = NULL, legend = TRUE)

Arguments

AP	matrix with age priors (P(A|R)/P(A)) with age differences in rows and relationships in columns; by default M: maternal parent (mother), P: paternal parent (father), FS: full siblings, MS: maternal siblings (full + half), PS: paternal siblings.
legend	if TRUE, a new plotting window is started and layout is used to plot a legend next to the main plot. Set to FALSE if you want to add it as panel to an existing plot (e.g. with par(mfcol=c(2,2))).

Value

A heatmap.

See Also

MakeAgePrior, SummarySeq.

Examples

PlotAgePrior(SeqOUT_griffin$AgePriors)
PlotAgePrior(SeqOUT_griffin$AgePriorExtra)

sequoia documentation built on Sept. 8, 2023, 5:29 p.m.