SmoothAP: Smooth out dips in ageprior matrix
In sequoia: Pedigree Inference from SNPs
SmoothAP R Documentation
Smooth out dips in ageprior matrix
Description
...
Usage
SmoothAP(V, tiny = 0.001)
Arguments
V
column in ageprior matrix (vector); strictly positive
tiny
smallest non-zero value in V
Details
Sets dips (<10% of average of neighbouring ages) to the average of
the neighbouring ages, sets the age after the end (oldest observed age) to
LR(end)/2, and assigns a small value (0.001) to the ages before the front
(youngest observed age) and after the new end. Peaks are not smoothed out,
as these are less likely to cause problems than dips, and are more likely
to be genuine characteristics of the species.
sequoia documentation built on Sept. 8, 2023, 5:29 p.m.
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| SmoothAP | R Documentation |
Smooth out dips in ageprior matrix
Description
...
Usage
SmoothAP(V, tiny = 0.001)
Arguments
V |
column in ageprior matrix (vector); strictly positive |
tiny |
smallest non-zero value in V |
Details
Sets dips (<10% of average of neighbouring ages) to the average of the neighbouring ages, sets the age after the end (oldest observed age) to LR(end)/2, and assigns a small value (0.001) to the ages before the front (youngest observed age) and after the new end. Peaks are not smoothed out, as these are less likely to cause problems than dips, and are more likely to be genuine characteristics of the species.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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