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## File Name: R2noharm-utility.R
## File Version: 1.14
#..............................................................................
# utility functions for R2noharm
#---------------------------------------------------------------
# Read Tanaka Index
.noharm.tanaka <- function( noharmout1 ){
i1 <- grep( "Tanaka", noharmout1 )
tanaka <- as.numeric( strsplit( paste(noharmout1[i1]), split="=" )[[1]][2] )
return(tanaka)
}
#---------------------------------------------------------------
#-----------------------------------------------------------------
# Root mean square of residuals
.noharm.rmsr <- function( noharmout1 ){
i1 <- grep( "Root mean square of residuals", noharmout1 )
RMSR <- as.numeric( strsplit( paste(noharmout1[i1]), split="=" )[[1]][2] )
return(RMSR)
}
#-----------------------------------------------------------------
#------------------------------------------------------------------
# UNIQUE VARIANCES, thresholds, 1-dimensional parametrizations #
.noharm.itemlevel <- function( noharmout1, itemlevel.type, I=I,dat=dat){
i1 <- grep( itemlevel.type, noharmout1 )
VV <- floor(I/9)+1 * ( I/9 !=floor( I/9) )
uniquevar <- noharmout1[ seq( i1+5, i1 + 5 + 4*(VV-1), 4 ) ]
#*** addition ARb 2014-01-29
uniquevar <- uniquevar[ substring( uniquevar, 1, 1 )==" " ]
#***
uniquevar <- paste( uniquevar, collapse=" " )
uniquevar <- strsplit( uniquevar, split=" " )[[1]]
uniquevar <- as.numeric( paste( uniquevar[ uniquevar !="" ] ) )
uniquevar <- uniquevar[1:I]
names(uniquevar) <- colnames(dat)
return( uniquevar )
}
#------------------------------------------------------------------
#-------------------------------------------------------------------
# Function for extracting factor loadings
.noharm.loadings <- function( noharmout1, type1, type2, dimensions=dimensions, I=I, dat=dat){
i1 <- grep( type1, noharmout1 )[1]
i2 <- grep( type2, noharmout1 )[1]
rows <- seq( i1+2, i2-4 )
if ( ( dimensions==1 ) & ( type1=="Factor Loadings" ) ){
rows <- seq(i1+2, i2-6 )
}
r1 <- intersect( which( noharmout1=="" ), rows )
VV <- length(r1)/2
r2 <- stats::aggregate( r1, list(rep( 1:VV, each=2 )), mean )
colnames(r2) <- c("index", "index.row" )
index.m <- data.frame( r2, "begin"=r2[,2] + 2,
"end"=c( r2[,2][-1] - 2, i2-4 ) )
if ( dimensions==1 & type1=="Factor Loadings"){
index.m$end <- i2 - 6
}
loading.matrix <- matrix(0,I,dimensions)
rownames(loading.matrix) <- colnames(dat)
colnames(loading.matrix) <- paste( "F", 1:dimensions, sep="")
for (vv in 1:VV){
ind.vv.col <- noharmout1[ index.m$index.row[vv] ]
ind.vv.col <- strsplit( ind.vv.col, split=" " )[[1]]
ind.vv.col <- as.numeric( ind.vv.col[ ind.vv.col !="" ] )
ind.vv <- seq( index.m$begin[vv], index.m$end[vv] )
loading.vv <- noharmout1[ ind.vv ]
loading.vv <- sapply( loading.vv, FUN=function(ll){
ll1 <- strsplit( paste(ll), split=" " )[[1]]
as.numeric( ll1[ ll1 !=ll1[1] ] )
} )
loading.vv <- as.matrix( loading.vv )
ind.vv.row <- as.vector( loading.vv[1,] )
loading.vv <- loading.vv[-1,]
loading.matrix[ ind.vv.row, ind.vv.col ] <- t(loading.vv)
}
return( loading.matrix )
}
#--------------------------------------------------------------------------------------
#--------------------------------------------------------------------------
# Function for extracting Factor Correlations
.noharm.correlations <- function( noharmout1,
type1="Factor Correlations",
type2="Residual Matrix",
dimensions=dimensions, dat=dat ){
i1 <- grep( type1, noharmout1 )[1]
i2 <- grep( type2, noharmout1 )[1]
rows <- seq( i1+2, i2-4 )
r1 <- intersect( which( noharmout1=="" ), rows )
VV <- length(r1)/2
r2 <- stats::aggregate( r1, list(rep( 1:VV, each=2 )), mean )
colnames(r2) <- c("index", "index.row" )
index.m <- data.frame( r2, "begin"=r2[,2] + 2,
"end"=c( r2[,2][-1] - 2, i2-4 ) )
correlation.matrix <- matrix(NA,dimensions,dimensions)
rownames(correlation.matrix) <- colnames(correlation.matrix) <- paste( "F", 1:dimensions, sep="")
for (vv in 1:VV){
ind.vv.col <- noharmout1[ index.m$index.row[vv] ]
ind.vv.col <- strsplit( ind.vv.col, split=" " )[[1]]
ind.vv.col <- as.numeric( ind.vv.col[ ind.vv.col !="" ] )
ind.vv <- seq( index.m$begin[vv], index.m$end[vv] )
correlation.vv <- noharmout1[ ind.vv ]
correlation.vv <- sapply( correlation.vv, FUN=function(ll){
ll1 <- strsplit( paste(ll), split=" " )[[1]]
as.vector( as.numeric( ll1[ ll1 !="" ] ))
} )
if ( is.list( correlation.vv ) ){
ind.vv.row <- as.vector(unlist( lapply( correlation.vv, FUN=function(ll){ ll[1] } ) ))
correlation.vv <- lapply( correlation.vv, FUN=function(ll){ ll[-1] } )
} else {
correlation.vv <- as.vector( correlation.vv )
ind.vv.row <- correlation.vv[1]
correlation.vv <- as.list( correlation.vv[-1] )
}
RVV <- length(correlation.vv)
for (rvv in 1:RVV){
correlation.vv.rvv <- correlation.vv[[rvv]]
i1.rvv <- ind.vv.row[rvv]
i2.rvv <- ind.vv.col[ seq( 1, length(correlation.vv.rvv)) ]
correlation.matrix[ i2.rvv, i1.rvv ] <- correlation.matrix[ i1.rvv, i2.rvv ] <- correlation.vv.rvv
}
}
correlation.matrix
}
#---------------------------------------------------------------------------------------------
#--------------------------------------------------------------------------#
# Extracting Residual Matrix #
.noharm.residuals <- function(noharmout1, I=I, dat=dat ){
i1 <- grep( "Residual Matrix", noharmout1 )
i2 <- grep( "Sum of squares of residuals", noharmout1 )
rows <- seq( i1+2, i2-4 )
r1 <- intersect( which( noharmout1=="" ), rows )
VV <- length(r1)/2
r2 <- stats::aggregate( r1, list(rep( 1:VV, each=2 )), mean )
colnames(r2) <- c("index", "index.row" )
index.m <- data.frame( r2, "begin"=r2[,2] + 2,
# "end"=c( r2[,2][-1] - 2, i2-4 ) )
"end"=c( r2[,2][-1] - 2, i2-3 ) )
resid.matrix <- matrix(0,I,I)
rownames(resid.matrix) <- colnames(resid.matrix) <- colnames(dat)
for (vv in 1:VV){
ind.vv.col <- noharmout1[ index.m$index.row[vv] ]
ind.vv.col <- strsplit( ind.vv.col, split=" " )[[1]]
ind.vv.col <- as.numeric( ind.vv.col[ ind.vv.col !="" ] )
ind.vv <- seq( index.m$begin[vv], index.m$end[vv] )
resid.vv <- noharmout1[ ind.vv ]
resid.vv <- sapply( resid.vv, FUN=function(ll){
ll1 <- strsplit( paste(ll), split=" " )[[1]]
as.numeric( ll1[ ll1 !="" ] )
} )
if (is.list( resid.vv)){
gh1 <- lapply( resid.vv, FUN=function(ll){ length(ll) } )
ind1 <- which (gh1==0)
if ( length(ind1) > 0 ){
for (ii in ind1 ){ resid.vv[[ii]] <- NULL }
}
ind.vv.row <- as.vector(unlist( lapply( resid.vv, FUN=function(ll){ ll[1] } ) ))
resid.vv <- lapply( resid.vv, FUN=function(ll){ ll[-1] } )
} else {
resid.vv <- as.vector(resid.vv)
ind.vv.row <- resid.vv[1]
resid.vv <- as.list( resid.vv[-1] )
}
RVV <- length(resid.vv)
for (rvv in 1:RVV){
resid.vv.rvv <- resid.vv[[rvv]]
i1.rvv <- ind.vv.row[rvv]
i2.rvv <- ind.vv.col[ seq( 1, length(resid.vv.rvv)) ]
resid.matrix[ i2.rvv, i1.rvv ] <- resid.matrix[ i1.rvv, i2.rvv ] <- resid.vv.rvv
}
}
return( resid.matrix )
}
#-------------------------------------------------------------------------------------
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