viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly' and 'polyqtlR' packages.

Getting started

Package details

AuthorCristiane Taniguti [aut, cre], Gabriel Gesteira [aut], Jeekin Lau [ctb], Guilherme Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut]
MaintainerCristiane Taniguti <chtaniguti@tamu.edu>
LicenseGPL-3
Version0.1.1
URL https://github.com/mmollina/viewpoly
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("viewpoly")

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viewpoly documentation built on Jan. 3, 2022, 5:10 p.m.