prepare_map_custom_files: Converts map information in custom format files to viewmap...

In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Converts map information in custom format files to viewmap object

Description

Converts map information in custom format files to viewmap object

Usage

prepare_map_custom_files(dosages, phases, genetic_map, mks_pos = NULL)

Arguments

dosages	TSV or TSV.GZ file with both parents dosage information. It should contain four columns: 1) character vector with chromosomes ID; 2) Character vector with markers ID; 3) Character vector with parent ID; 4) numerical vector with dosage.
phases	TSV or TSV.GZ file with phases information. It should contain: 1) Character vector with chromosome ID; 2) Character vector with marker ID; 3 to (ploidy number)*2 columns with each parents haplotypes.
genetic_map	TSV or TSV.GZ file with the genetic map information
mks_pos	TSV or TSV.GZ file with table with three columns: 1) marker ID; 2) genome position; 3) chromosome

Value

object of class viewmap

viewpoly documentation built on Nov. 2, 2022, 1:05 a.m.