map_summary: Gets summary information from map. Adapted from MAPpoly

In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Gets summary information from map. Adapted from MAPpoly

Description

Gets summary information from map. Adapted from MAPpoly

Usage

map_summary(left.lim = 0, right.lim = 5, ch = 1, maps, d.p1, d.p2)

Arguments

left.lim	covered window in the linkage map start position
right.lim	covered window in the linkage map end position
ch	linkage group ID
maps	list containing a vector for each linkage group markers with marker positions (named with marker names)
d.p1	list containing a data.frame for each group with parent 1 dosages. The data.frame contain the columns: 1) character vector with chromosomes ID; 2) Character vector with markers ID; 3) Character vector with parent ID; 4) numerical vector with dosage
d.p2	list containing a data.frame for each group with parent 2 dosages. See d.p1 parameter description

Value

list with linkage map information: doses; number snps by group; cM per snp; map size; number of linkage groups

viewpoly documentation built on May 29, 2024, 1:26 a.m.