segreg_poly: Polysomic segregation frequency - Function from MAPpoly
In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
View source: R/utils_helpers.R
segreg_poly R Documentation
Polysomic segregation frequency - Function from MAPpoly
Description
Computes the polysomic segregation frequency given a ploidy level
and the dosage of the locus in both parents. It does not consider
double reduction.
Usage
segreg_poly(ploidy, d.p1, d.p2)
Arguments
ploidy
the ploidy level
d.p1
the dosage in parent P
d.p2
the dosage in parent Q
Value
a vector containing the expected segregation frequency for
all possible genotypic classes.
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage
analysis and haplotype phasing in experimental autopolyploid
populations with high ploidy level using hidden Markov
models, _G3: Genes, Genomes, Genetics_.
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/g3.119.400378")}
Serang O, Mollinari M, Garcia AAF (2012) Efficient Exact
Maximum a Posteriori Computation for Bayesian SNP
Genotyping in Polyploids. _PLoS ONE_ 7(2):
e30906.
viewpoly documentation built on May 29, 2024, 1:26 a.m.
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View source: R/utils_helpers.R
| segreg_poly | R Documentation |
Polysomic segregation frequency - Function from MAPpoly
Description
Computes the polysomic segregation frequency given a ploidy level and the dosage of the locus in both parents. It does not consider double reduction.
Usage
segreg_poly(ploidy, d.p1, d.p2)
Arguments
ploidy |
the ploidy level |
d.p1 |
the dosage in parent P |
d.p2 |
the dosage in parent Q |
Value
a vector containing the expected segregation frequency for all possible genotypic classes.
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1534/g3.119.400378")}
Serang O, Mollinari M, Garcia AAF (2012) Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids. _PLoS ONE_ 7(2): e30906.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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