prepare_polyqtlR: Converts polyqtlR outputs to viewqtl object
In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
View source: R/functions_upload.R
prepare_polyqtlR R Documentation
Converts polyqtlR outputs to viewqtl object
Description
Converts polyqtlR outputs to viewqtl object
Usage
prepare_polyqtlR(polyqtlR_QTLscan_list, polyqtlR_qtl_info, polyqtlR_effects)
Arguments
polyqtlR_QTLscan_list
list containing results from polyqtlR QTLscan_list function
polyqtlR_qtl_info
data.frame containing the QTL information:LG - group ID; Pos - QTL position (cM);
pheno - phenotype ID; Pos_lower - lower position of confidence interval; Pos_upper - upper position of the confidence interval;
thresh - LOD threshold applied
polyqtlR_effects
data.frame with results from visualiseQTLeffects polyqtlR function
Value
object of class viewqtl
viewpoly documentation built on Nov. 2, 2022, 1:05 a.m.
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View source: R/functions_upload.R
| prepare_polyqtlR | R Documentation |
Converts polyqtlR outputs to viewqtl object
Description
Converts polyqtlR outputs to viewqtl object
Usage
prepare_polyqtlR(polyqtlR_QTLscan_list, polyqtlR_qtl_info, polyqtlR_effects)
Arguments
polyqtlR_QTLscan_list |
list containing results from polyqtlR |
polyqtlR_qtl_info |
data.frame containing the QTL information:LG - group ID; Pos - QTL position (cM); pheno - phenotype ID; Pos_lower - lower position of confidence interval; Pos_upper - upper position of the confidence interval; thresh - LOD threshold applied |
polyqtlR_effects |
data.frame with results from |
Value
object of class viewqtl
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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