Files in viewpoly
A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/functions_qtl.R
R/mod_map_view.R
R/functions_map.R
R/functions_upload.R
R/app_server.R
R/app_config.R
R/mod_help.R
R/mod_hidecan.R
R/mod_qtl_view.R
R/mod_home.R
R/utils_helpers.R
R/app_ui.R
R/mod_upload.R
R/mod_genes_view.R
R/run_app.R
inst/app.R
inst/golem-config.yml
inst/WORDLIST
inst/app/www/viewpoly_logo.svg
inst/app/www/cornell_seal_simple_web_b31b1b.png
inst/app/www/BreedingInsight_Primary_RGBColor_400px.png
inst/app/www/breedverse_logo.png
inst/app/www/viewpoly-flowchart.png
inst/app/www/usda-logo-color.png
inst/app/www/logo.png
inst/app/www/BreedingInsight.png
inst/app/www/logo_white.png
inst/app/www/custom.css
inst/app/www/IFAS.jpg
inst/app/www/texas_logo.png
inst/app/www/custom.js
inst/app/www/include.html
inst/app/www/tools_logo.png
inst/app/www/BreedingInsight_Secondary_RGBColor_400px.png
inst/app/www/viewpoly_logo.png
inst/app/www/flow_chart.png
inst/help_files/Map_par.Rmd
inst/help_files/Map_cite.Rmd
inst/help_files/Hidecan_par.Rmd
inst/help_files/QTL_cite.Rmd
inst/help_files/Map_res.Rmd
inst/help_files/Hidecan_cite.Rmd
inst/help_files/QTL_par.Rmd
inst/help_files/Genome_cite.Rmd
inst/help_files/Genome_res.Rmd
inst/help_files/Genome_par.Rmd
inst/help_files/Inputs_res.Rmd
inst/help_files/Hidecan_res.Rmd
inst/help_files/Inputs_cite.Rmd
inst/help_files/QTL_res.Rmd
inst/help_files/Inputs_par.Rmd
inst/ext/phases.tsv.gz
inst/ext/beta.hat.tsv.gz
inst/ext/selected_mks.tsv.gz
inst/ext/dosage.tsv.gz
inst/ext/blups.tsv.gz
inst/ext/qtl_info.tsv.gz
inst/ext/viewmap_tetra.rda
inst/ext/probs.tsv.gz
inst/ext/viewqtl_tetra.rda
inst/ext/functions4tests.R
inst/ext/effects.tsv.gz
inst/ext/profile.tsv.gz
inst/ext/map.tsv.gz
build/partial.rdb
tests/testthat.R
tests/testthat/test-hidecan.R
tests/testthat/test-custom_files.R
tests/testthat/test-polyqtlR.R
tests/testthat/test-golem-recommended.R
tests/testthat/test-QTLpoly.R
tests/testthat/test-polymapR.R
tests/testthat/test-tetra_example.R
tests/testthat/test-MAPpoly.R
tests/testthat/test-diaQTL.R
tests/testthat/_snaps/tetra_example/plot-map-list.svg
tests/testthat/_snaps/tetra_example/linkage-map-draw-names.svg
tests/testthat/_snaps/tetra_example/effects-digenic.svg
tests/testthat/_snaps/tetra_example/linkage-map-draw.svg
tests/testthat/_snaps/tetra_example/effects-bar.svg
tests/testthat/_snaps/tetra_example/effects-circle.svg
tests/testthat/_snaps/tetra_example/qtl-plot.svg
man/map_summary.Rd
man/prepare_polymapR.Rd
man/only_plot_profile.Rd
man/prepare_map_custom_files.Rd
man/prepare_QTLpoly.Rd
man/mrk_chisq_test.Rd
man/get_LOD.Rd
man/calc_homologprob.Rd
man/read_input_hidecan.Rd
man/plot_cm_mb.Rd
man/prepare_qtl_custom_files.Rd
man/segreg_poly.Rd
man/plot_effects.Rd
man/filter_non_conforming_classes.Rd
man/ph_matrix_to_list.Rd
man/imf_h.Rd
man/run_app.Rd
man/plot_profile.Rd
man/prepare_polyqtlR.Rd
man/coord_radar.Rd
man/import_data_from_polymapR.Rd
man/is.prob.data.Rd
man/plot_one_map.Rd
man/prepare_MAPpoly.Rd
man/plot.mappoly.homoprob.Rd
man/check_viewqtl.Rd
man/breeding_values.Rd
man/select_haplo.Rd
man/plot_map_list.Rd
man/gg_color_hue.Rd
man/check_viewmap.Rd
man/data_effects.Rd
man/prepare_examples.Rd
man/check_viewpoly.Rd
man/prepare_map.Rd
man/dist_prob_to_class.Rd
man/summary_maps.Rd
man/mf_h.Rd
man/prepare_diaQTL.Rd
man/draw_map_shiny.Rd
man/import_phased_maplist_from_polymapR.Rd
man/ph_list_to_matrix.Rd
