select_haplo: Plot selected haplotypes

In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Plot selected haplotypes

Description

Plot selected haplotypes

Usage

select_haplo(
  input.haplo,
  probs,
  selected_mks,
  effects.data,
  exclude.haplo = NULL
)

Arguments

input.haplo	character vector with selected haplotypes. It contains the information: "Trait:<trait ID>_LG:<linkage group ID_Pos:<QTL position>"
probs	data.frame with first column (named 'ind') as individuals ID and next columns named with markers ID and containing the genotype probability at each marker
selected_mks	data.frame with: LG - linkage group ID; mk - marker ID; pos - position in linkage map (cM)
effects.data	output object from data_effects function
exclude.haplo	character vector with haplotypes to be excluded. It contains the information: "Trait:<trait ID>_LG:<linkage group ID_Pos:<QTL position>"

Value

ggplot graphic

viewpoly documentation built on Nov. 2, 2022, 1:05 a.m.