import_phased_maplist_from_polymapR: Import phased map list from polymapR

In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Import phased map list from polymapR

Description

Function to import phased map lists from polymapR. Function from MAPpoly.

Usage

import_phased_maplist_from_polymapR(maplist, mappoly.data, ploidy = NULL)

Arguments

maplist	a list of phased maps obtained using function create_phased_maplist from package polymapR
mappoly.data	a dataset used to obtain maplist, converted into class mappoly.data
ploidy	the ploidy level

Details

See examples at https://rpubs.com/mmollin/tetra_mappoly_vignette.

Value

object of class mappoly.map

Author(s)

Marcelo Mollinari [e-mail]

References

Bourke PM et al: (2019) PolymapR — linkage analysis and genetic map construction from F1 populations of outcrossing polyploids. _Bioinformatics_ 34:3496–3502. doi: 10.1093/bioinformatics/bty1002

Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378

viewpoly documentation built on Nov. 2, 2022, 1:05 a.m.