plot_map_list: Plot a genetic map - Adapted from MAPpoly
In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
View source: R/functions_map.R
plot_map_list R Documentation
Plot a genetic map - Adapted from MAPpoly
Description
This function plots a genetic linkage map(s)
Usage
plot_map_list(viewmap, horiz = TRUE, col = "ggstyle", title = "Linkage group")
Arguments
viewmap
object of class viewmap
horiz
logical. If FALSE, the maps are plotted vertically with the first map to the left.
If TRUE (default), the maps are plotted horizontally with the first at the bottom
col
a vector of colors for the bars or bar components (default = 'lightgrey')
ggstyle produces maps using the default ggplot color palette
title
a title (string) for the maps (default = 'Linkage group')
Value
A data.frame object containing the name of the markers and their genetic position
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
Cristiane Taniguti, chtaniguti@tamu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage
analysis and haplotype phasing in experimental autopolyploid
populations with high ploidy level using hidden Markov
models, _G3: Genes, Genomes, Genetics_.
doi: 10.1534/g3.119.400378
viewpoly documentation built on Nov. 2, 2022, 1:05 a.m.
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View source: R/functions_map.R
| plot_map_list | R Documentation |
Plot a genetic map - Adapted from MAPpoly
Description
This function plots a genetic linkage map(s)
Usage
plot_map_list(viewmap, horiz = TRUE, col = "ggstyle", title = "Linkage group")
Arguments
viewmap |
object of class |
horiz |
logical. If FALSE, the maps are plotted vertically with the first map to the left. If TRUE (default), the maps are plotted horizontally with the first at the bottom |
col |
a vector of colors for the bars or bar components (default = 'lightgrey')
|
title |
a title (string) for the maps (default = 'Linkage group') |
Value
A data.frame object containing the name of the markers and their genetic position
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
Cristiane Taniguti, chtaniguti@tamu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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