API for AndersenLab/cegwas
A set of functions to process phenotype data, perform GWAS, and perform post-mapping data processing for C. elegans.
| Global functions | |
|---|---|
| allele_distribution | Man page Source code |
| calculate_VE | Man page Source code |
| cegwas_map | Man page Source code |
| fetch_id_type | Man page Source code |
| find_peaks | Man page Source code |
| fine_map_plot | Man page |
| gene_variants | Man page |
| generate_kinship | Man page Source code |
| generate_mapping | Man page Source code |
| get_db | Man page Source code |
| get_vcf | Man page Source code |
| gwas_mappings | Man page Source code |
| identify_CI | Man page Source code |
| interval_summary | Man page Source code |
| kinship | Man page |
| manplot | Man page Source code |
| mod_bamf_prune | Source code |
| plot_peak_ld | Man page |
| process_correlations | Man page Source code |
| process_mappings | Man page Source code |
| process_pheno | Man page Source code |
| pxg_plot | Man page |
| qq_plot | Man page |
| query_vcf | Man page Source code |
| remove_lowFreq_phenotypes | Source code |
| resolve_isotype | Man page Source code |
| snpeff | Man page |
| snps | Man page |
| spike | Man page Source code |
| tajimas_d | Man page Source code |
| variant_correlation | Man page Source code |
| vcf_to_matrix | Man page Source code |
