interval_summary: Interval Summary
In AndersenLab/cegwas: A set of functions to process phenotype data, perform GWAS, and perform post-mapping data processing for C. elegans.
Description
Usage
Arguments
Value
Examples
View source: R/variant_correlation.R
Description
interval_summary Summarizes variation within an interval.
Can also be used to summarize regions by wormbase identifier or locus name.
Usage
1
interval_summary(query, filter_variants = T, impute = F)
Arguments
query
A query such as pot-2, I:1-1000, WBGene00010195.
filter_variants
Filter out poor quality variants. Default is TRUE. Not compatible with imputed data.
impute
Use imputed data. Default is FALSE.
Value
data frame of summarized information.
Examples
1
interval_summary("pot-1")
AndersenLab/cegwas documentation built on March 6, 2020, 1:10 a.m.
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Description Usage Arguments Value Examples
View source: R/variant_correlation.R
Description
interval_summary Summarizes variation within an interval.
Can also be used to summarize regions by wormbase identifier or locus name.
Usage
1 | interval_summary(query, filter_variants = T, impute = F)
|
Arguments
query |
A query such as |
filter_variants |
Filter out poor quality variants. Default is TRUE. Not compatible with imputed data. |
impute |
Use imputed data. Default is FALSE. |
Value
data frame of summarized information.
Examples
1 | interval_summary("pot-1")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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