API for AndersenLab/cegwas
A set of functions to process phenotype data, perform GWAS, and perform post-mapping data processing for C. elegans.

Global functions
allele_distribution Man page Source code
calculate_VE Man page Source code
cegwas_map Man page Source code
fetch_id_type Man page Source code
find_peaks Man page Source code
fine_map_plot Man page
gene_variants Man page
generate_kinship Man page Source code
generate_mapping Man page Source code
get_db Man page Source code
get_vcf Man page Source code Source code
gwas_mappings Man page Source code
identify_CI Man page Source code
interval_summary Man page Source code
kinship Man page
manplot Man page Source code
mod_bamf_prune Source code
plot_peak_ld Man page
process_correlations Man page Source code
process_mappings Man page Source code
process_pheno Man page Source code
pxg_plot Man page
qq_plot Man page
query_vcf Man page Source code
remove_lowFreq_phenotypes Source code
resolve_isotype Man page Source code
snpeff Man page Source code
snps Man page
spike Man page Source code
tajimas_d Man page Source code
variant_correlation Man page Source code
vcf_to_matrix Man page Source code
AndersenLab/cegwas documentation built on May 5, 2019, 4:57 a.m.