fine_map_plot: Fine mapping plot of GWAS confidence interval

Description Usage Arguments Value

Description

fine_map_plot Fine mapping plot of GWAS confidence interval

Usage

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fine_map_plot(df, plot_trait, strain_comparison = "CB4856", color1 = "blue",
  color2 = "orange")

Arguments

df

is a dataframe that is output by process_correlations function

plot_trait

is a character vector corresponding to the trait of interest.

strain_comparison

is a character vector corresponding to which strain genotype to use to color points by. Default is CB4856, which will color all variants that CB4856 contains a different color

color1

is a character vector corresponding to the color of the ALT genotype points. Default is blue

color2

is a character vector corresponding to the color of the REF genotype points. Default is orange

Value

returns a ggplot2 object


AndersenLab/cegwas documentation built on March 6, 2020, 1:10 a.m.