manplot: Manhattan Plot for GWAS Mapping Data

Description Usage Arguments Value

View source: R/plots.R

Description

manplot generates a manhattan plot using ggplot2

Usage

1
manplot(plot_df, bf_line_color = "gray")

Arguments

plot_df

the output from the gwas_mappings function.

bf_line_color

Set color of bonferroni line.

Value

Ouput is a ggplot object facetted by chromosome. SNPs above bonferroni corrected p-value (gray line) are colored blue. Confidence interval for a given peak is highlighted in red.


AndersenLab/cegwas documentation built on March 6, 2020, 1:10 a.m.