Description Usage Arguments Value Examples
snpeff
enables you to query variants called and annotated by the Andersen Lab.
1 2 |
... |
Gene names, regions, or wormbase identifiers to query. |
severity |
A vector with variants of given severities (LOW, MODERATE, HIGH, MODIFIER). Default takes moderate and high. Use "ALL" to return all variants. |
elements |
A vector containing gene structural elements (CDS, five_prime_UTR, exon, intron, three_prime_UTR). Use "ALL" to return all variants. |
long |
Return dataset in long or wide format. Default is to return in long format. |
remote |
Use remote data. Checks for local data if possible. False by default. |
use |
custom vcf file. |
Outputs a data frame that contains phenotype data, mapping data, and gene information for highly correlated variants in a particular QTL confidence interval.
1 | snpeff("pot-2","II:1-10000","WBGene00010785")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.