Files in AndersenLab/cegwas
A set of functions to process phenotype data, perform GWAS, and perform post-mapping data processing for C. elegans.

.Rbuildignore
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DESCRIPTION
NAMESPACE
R/gwas_mappings.R R/plots.R R/popgen.R R/process_mappings.R R/process_phenotypes.R R/spike.R R/variant_correlation.R R/vcf.R README.md
WI.20170531.soft-filtered.vcf.gz.csi
cegwas.Rproj
data/.Rapp.history
data/example_mapping_output.Rda
data/gene_functions.rda
data/gene_ids.rda
data/isotype_location.rda
data/kinship.rda
data/mapping_snps.rda
data/snps.rda
data/strain_isotype.rda
data/strain_isotype_mapping.rda
data/vcf_version.rda
data/wb_build.rda
inst/41188.WS245.txt.gz
inst/41188.WS245.txt.gz.tbi
inst/WI.20160408.impute.vcf.gz
inst/WI.20160408.impute.vcf.gz.csi
inst/WI.20160408.impute.vcf.gz.tbi
inst/build_data.R
inst/data-raw/mapping_strain_isotype.tsv
inst/setup_db.py
man/.Rapp.history
man/allele_distribution.Rd man/calculate_VE.Rd man/cegwas_map.Rd man/fetch_id_type.Rd man/find_peaks.Rd man/fine_map_plot.Rd man/gene_variants.Rd man/generate_kinship.Rd man/generate_mapping.Rd man/get_db.Rd man/get_vcf.Rd man/gwas_mappings.Rd man/identify_CI.Rd man/interval_summary.Rd man/manplot.Rd man/plot_peak_ld.Rd man/process_correlations.Rd man/process_mappings.Rd man/process_pheno.Rd man/pxg_plot.Rd man/qq_plot.Rd man/resolve_isotype.Rd man/snpeff.Rd man/spike.Rd man/tajimas_d.Rd man/variant_correlation.Rd man/vcf_to_matrix.Rd tests/testthat.R tests/testthat/test.R
AndersenLab/cegwas documentation built on Dec. 8, 2017, 5:45 a.m.