query_vcf: Query VCF Data

Description Usage Arguments Value Examples

View source: R/query_vcf.R

Description

query_vcf enables you to query variants within a VCF

Usage

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query_vcf(..., info = c(), format = c("TGT"), impact = c("MODERATE",
  "HIGH"), samples = "ALL", long = TRUE, vcf = get_vcf())

Arguments

...

Gene names, regions, or wormbase identifiers to query.

info

Info columns to output. If an ANN (annotation) column is available it is automatically fetched. [Default c()]

samples

A set of samples to subset on [default: "ALL"]

long

Return dataset in long or wide format. [Default TRUE]

vcf

Use a custom VCF.

Value

Dataframe with variant data

Examples

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query_vcf("pot-2","II:1-10000","WBGene00010785")

AndersenLab/cegwas documentation built on March 6, 2020, 1:10 a.m.