Description Usage Arguments Value Examples
plot_peak_ld
generates a plot to visualize LD (r) for significant SNPs in a mapping
1 | plot_peak_ld(plot_df, trait = NULL)
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plot_df |
is the output from the process_mappings function. |
trait |
is a string object corresponding to a trait of interest if plot_df has multiple traits in it. |
returns an LDHeatmap object of SNPs that are above the Bonferroni corrected p-value
1 2 | plot_peak_ld(processed_mapping_df) # for a one trait mapping data frame
plot_peak_ld(plot_df = all_maps, trait = "amsacrine_f.l1") # for a multiple trait mapping data frame
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