API for Arthurhe/Lightbulb
single cell RNA-seq analysis suite/pipeline
| Global functions | |
|---|---|
| Associate_with_super_cell | Source code |
| DEG | Source code |
| DEG_UMI | Source code |
| Fill_Seurat_DR | Source code |
| Module_intersection | Source code |
| Module_intersection_all | Source code |
| Subsample_by_group | Source code |
| Subsample_by_group_BreakEven | Source code |
| Subsample_by_group_and_importance | Source code |
| Super_cell_creation | Man page Source code |
| WGCNA_dendrogram | Source code |
| WGCNA_gene_remove | Source code |
| WGCNA_plot1 | Source code |
| WGCNA_plot2 | Source code |
| WGCNA_rename_gene_group | Source code |
| WGCNA_run | Source code |
| batch_lineage_refine | Source code |
| bedtools_intersect | Source code |
| bulk_list_normalize | Man page Source code |
| calc_impulse | Source code |
| cellTypeDF_processing | Source code |
| cellcycle_assigning | Source code |
| celltype_annotation_by_cluster | Man page Source code |
| cluster_distance | Source code |
| cluster_organizing | Source code |
| cluster_per_timepoint | Source code |
| cluster_subdivision | Source code |
| colMaxs | Source code |
| colMins | Source code |
| colSds | Source code |
| combo_identification | Source code |
| cross_combining | Source code |
| data_preprocessing | Man page Source code |
| dropcol | Source code |
| filter_ident | Source code |
| filter_metadata | Source code |
| find_time_by_eigengene_spline | Source code |
| firstup | Source code |
| fit_impulse | Source code |
| fit_lineage_spline | Source code |
| get_major_gene_pattern | Source code |
| get_tiling_matrix | Source code |
| gp_name_replacing | Source code |
| lightTree | Source code |
| list.dirs | Source code |
| lsnofun | Source code |
| matrix_Aggregate | Source code |
| metadata_reprocessing | Man page Source code |
| outlier_filtering | Source code |
| plotByGroup | Source code |
| plotByGroupA_byB | Source code |
| plotByGroup_1by1 | Source code |
| plotByScore | Source code |
| plot_SC_sampleSet_cor_2nd_TSNE | Man page Source code |
| plot_SC_sampleSet_cor_TSNE | Man page Source code |
| plot_SC_sampleSet_cor_distribution | Man page Source code |
| plot_bulk_bulk_cor | Man page Source code |
| plot_group_annotation_TSNE | Man page Source code |
| plot_major_gene_pattern | Source code |
| plot_scMeta | Man page Source code |
| plot_scMeta_NotOnlySuperCell_byIdent | Man page Source code |
| plot_scMeta_NotOnlySuperCell_by_category | Man page Source code |
| plot_table_rank | Source code |
| prepare_input | Source code |
| reassign_cluster | Source code |
| rowMaxs | Source code |
| rowMins | Source code |
| rowSds | Source code |
| scMCA_celltype_conversion | Source code |
| scMCA_celltype_conversion_filtering | Source code |
| second_to_humanReadableTime | Source code |
| secondary_cor | Man page Source code |
| split_list_by_group | Source code |
| tiling_around_region | Source code |
| tiling_within_region | Source code |
| tree_search | Source code |
| two_impulses | Source code |
| umap_seurat | Source code |
| value_spliting | Source code |
| which.colmax | Source code |
| write_DEG | Source code |
| write_id_by_group | Source code |
