plot_SC_sampleSet_cor_2nd_TSNE: plot the 2nd correlation between sc and bulk sample on TSNE
In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline
View source: R/Arthurs_cell_annotation_functions.R
Description
plot the 2nd correlation between sc and bulk sample on TSNE
Usage
1
2
plot_SC_sampleSet_cor_2nd_TSNE(dataset, Exp_Seurat, color_contrast = 1,
plot_sets = NULL)
Arguments
dataset
dataset object ouput by secondary_cor
Exp_Seurat
Seurat object with @dr$tsne slot calcualted
color_contrast
positive number for adjusting color contrast, default=1
plot_sets
which bulk sample set to plot
Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.
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View source: R/Arthurs_cell_annotation_functions.R
Description
plot the 2nd correlation between sc and bulk sample on TSNE
Usage
1 2 | plot_SC_sampleSet_cor_2nd_TSNE(dataset, Exp_Seurat, color_contrast = 1,
plot_sets = NULL)
|
Arguments
dataset |
dataset object ouput by secondary_cor |
Exp_Seurat |
Seurat object with @dr$tsne slot calcualted |
color_contrast |
positive number for adjusting color contrast, default=1 |
plot_sets |
which bulk sample set to plot |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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