Files in Arthurhe/Lightbulb

single cell RNA-seq analysis suite/pipeline

.gitignore

DESCRIPTION

Examples/Lightbulb_example_annotate_cell_V0.2.ipynb

Examples/Lightbulb_example_annotate_cell_V0.2.md

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_19_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_21_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_25_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_29_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_31_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_31_1.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_39_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_40_0.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_40_1.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_40_2.png

Examples/Lightbulb_example_annotate_cell_V0.2_files/Lightbulb_example_annotate_cell_V0.2_40_3.png

Examples/Lightbulb_example_super_cell_creation_V1.ipynb

Examples/Lightbulb_example_super_cell_creation_V1.md

Lightbulb.Rproj

NAMESPACE

R/Arthurs_cell_annotation_functions.R R/Arthurs_common_Rfunction.R R/Arthurs_predefined_WGCNA_functions.R R/Impulse.R R/LightTree.R R/LightTree_alternative.R R/Seurat_ploting_suite.R R/sc_functions.R README.md man/Super_cell_creation.Rd man/bulk_list_normalize.Rd man/celltype_annotation_by_cluster.Rd man/data_preprocessing.Rd man/metadata_reprocessing.Rd man/plot_SC_sampleSet_cor_2nd_TSNE.Rd man/plot_SC_sampleSet_cor_TSNE.Rd man/plot_SC_sampleSet_cor_distribution.Rd man/plot_bulk_bulk_cor.Rd man/plot_group_annotation_TSNE.Rd man/plot_scMeta.Rd man/plot_scMeta_NotOnlySuperCell_byIdent.Rd man/plot_scMeta_NotOnlySuperCell_by_category.Rd man/secondary_cor.Rd

src/Lightbulb_MagicWrapper.py

trashed_codes/tmp.R

Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.