bulk_list_normalize: prepare and normalize the bulk list object for...

In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline

Description

This function loads a list object contains all the bulk RNA-seq samples. It normalizes the bulk RNA-seq data to log2 TPM. The input object should looks like this: bulk_list=list(sample_set1=list(sample1=sample1_gene_expression,sample2=sample2_gene_expression), sample_set2=list(sample3=sample3_gene_expression),sample4=sample4_gene_expression)) sampleX_gene_expression can be either a vector, or a data.frame that each row is a replicate, each col is a gene. the gene order of all sampleX_gene_expression must be the same

Usage

bulk_list_normalize(bulk_list)

Arguments

bulk_list

input bulk list

Value

an bulk_list object

Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.