Global functions | |
---|---|
Associate_with_super_cell | Source code |
DEG | Source code |
DEG_UMI | Source code |
Fill_Seurat_DR | Source code |
Module_intersection | Source code |
Module_intersection_all | Source code |
Subsample_by_group | Source code |
Subsample_by_group_BreakEven | Source code |
Subsample_by_group_and_importance | Source code |
Super_cell_creation | Man page Source code |
WGCNA_dendrogram | Source code |
WGCNA_gene_remove | Source code |
WGCNA_plot1 | Source code |
WGCNA_plot2 | Source code |
WGCNA_rename_gene_group | Source code |
WGCNA_run | Source code |
batch_lineage_refine | Source code |
bedtools_intersect | Source code |
bulk_list_normalize | Man page Source code |
calc_impulse | Source code |
cellTypeDF_processing | Source code |
cellcycle_assigning | Source code |
celltype_annotation_by_cluster | Man page Source code |
cluster_distance | Source code |
cluster_organizing | Source code |
cluster_per_timepoint | Source code |
cluster_subdivision | Source code |
colMaxs | Source code |
colMins | Source code |
colSds | Source code |
combo_identification | Source code |
cross_combining | Source code |
data_preprocessing | Man page Source code |
dropcol | Source code |
filter_ident | Source code |
filter_metadata | Source code |
find_time_by_eigengene_spline | Source code |
firstup | Source code |
fit_impulse | Source code |
fit_lineage_spline | Source code |
get_major_gene_pattern | Source code |
get_tiling_matrix | Source code |
gp_name_replacing | Source code |
lightTree | Source code |
list.dirs | Source code |
lsnofun | Source code |
matrix_Aggregate | Source code |
metadata_reprocessing | Man page Source code |
outlier_filtering | Source code |
plotByGroup | Source code |
plotByGroupA_byB | Source code |
plotByGroup_1by1 | Source code |
plotByScore | Source code |
plot_SC_sampleSet_cor_2nd_TSNE | Man page Source code |
plot_SC_sampleSet_cor_TSNE | Man page Source code |
plot_SC_sampleSet_cor_distribution | Man page Source code |
plot_bulk_bulk_cor | Man page Source code |
plot_group_annotation_TSNE | Man page Source code |
plot_major_gene_pattern | Source code |
plot_scMeta | Man page Source code |
plot_scMeta_NotOnlySuperCell_byIdent | Man page Source code |
plot_scMeta_NotOnlySuperCell_by_category | Man page Source code |
plot_table_rank | Source code |
prepare_input | Source code |
reassign_cluster | Source code |
rowMaxs | Source code |
rowMins | Source code |
rowSds | Source code |
scMCA_celltype_conversion | Source code |
scMCA_celltype_conversion_filtering | Source code |
second_to_humanReadableTime | Source code |
secondary_cor | Man page Source code |
split_list_by_group | Source code |
tiling_around_region | Source code |
tiling_within_region | Source code |
tree_search | Source code |
two_impulses | Source code |
umap_seurat | Source code |
value_spliting | Source code |
which.colmax | Source code |
write_DEG | Source code |
write_id_by_group | Source code |
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