Man pages for Arthurhe/Lightbulb
single cell RNA-seq analysis suite/pipeline
| bulk_list_normalize | prepare and normalize the bulk list object for... |
| celltype_annotation_by_cluster | match scRNA clusters with bulk annotation |
| data_preprocessing | process the list of bulk samples, the single cell matrix into... |
| metadata_reprocessing | match bulk annotation with scRNA groups |
| plot_bulk_bulk_cor | plot the correlation between all bulk samples |
| plot_group_annotation_TSNE | plot the group annotation on TSNE |
| plot_scMeta | plot the group annotation one by one on TSNE |
| plot_scMeta_NotOnlySuperCell_by_category | plot the group annotation one by one on TSNE, using all the... |
| plot_scMeta_NotOnlySuperCell_byIdent | plot the cell cluster one by one on TSNE, using all the... |
| plot_SC_sampleSet_cor_2nd_TSNE | plot the 2nd correlation between sc and bulk sample on TSNE |
| plot_SC_sampleSet_cor_distribution | plot the distribution of sc to mean expresion of each sample... |
| plot_SC_sampleSet_cor_TSNE | plot the correlation between sc and bulk set mean on TSNE |
| secondary_cor | calculate the 2nd correlation |
| Super_cell_creation | Create super-cells from Seurat object or a matrix |
