plot_SC_sampleSet_cor_TSNE: plot the correlation between sc and bulk set mean on TSNE
In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline
View source: R/Arthurs_cell_annotation_functions.R
Description
plot the correlation between sc and bulk set mean on TSNE
Usage
1
2
plot_SC_sampleSet_cor_TSNE(dataset, Exp_Seurat, thresholds = NULL,
color_contrast = 1, plot_sets = NULL)
Arguments
dataset
dataset object ouput by data_preprocessing
thresholds
threshold for picking the highly similar cells, cells have similarity lower than threshold will be mark gray
Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.
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View source: R/Arthurs_cell_annotation_functions.R
Description
plot the correlation between sc and bulk set mean on TSNE
Usage
1 2 | plot_SC_sampleSet_cor_TSNE(dataset, Exp_Seurat, thresholds = NULL,
color_contrast = 1, plot_sets = NULL)
|
Arguments
dataset |
dataset object ouput by data_preprocessing |
thresholds |
threshold for picking the highly similar cells, cells have similarity lower than threshold will be mark gray |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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