data_preprocessing: process the list of bulk samples, the single cell matrix into...

In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline

Description

This function loads the bulk_list object output by "bulk_list_normalize", a single cell matrix and a gene id vector each row of the single cell matrix is a row, and each column is a gene. The gene id vector must be identical to the gene order of the single cell matrix, and the gene order of bulk_list

Usage

data_preprocessing(bulk_list, sc_mat, gene_id = NULL)

Arguments

bulk_list	input bulk list
sc_mat	input single cell / super cell matrix
gene_id	input gene id vector

Value

an data_set object

Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.