pipeline

View source: R/Arthurs_cell_annotation_functions.R

plot the group annotation one by one on TSNE, using all the single cells rather than cells in dataset@sc_mat

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plot_scMeta_NotOnlySuperCell_by_category(dataset, Exp_Seurat,
  identMatch = NULL, by_category = "timepoint", main = "",
  addtext = T, rm_small_group = T, tagcell = NULL)

`dataset`	dataset object with sc_mat slot
`Exp_Seurat`	Seurat object with @dr$tsne slot and @meta.data
`identMatch`	a named vector for renaming the clusters, by default it's ataset$cluster_annotation
`by_category`	which column of Exp_Seurat@meta.data shoule we plot (column name), by default it's "timepoint"