plot_scMeta_NotOnlySuperCell_byIdent: plot the cell cluster one by one on TSNE, using all the...
In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline
View source: R/Arthurs_cell_annotation_functions.R
Description
plot the cell cluster one by one on TSNE, using all the single cells rather than cells in dataset@sc_mat
Usage
1
2
plot_scMeta_NotOnlySuperCell_byIdent(dataset, Exp_Seurat,
identMatch = NULL, main = "annotated cluster", addtext = T)
Arguments
dataset
dataset object with sc_mat slot
Exp_Seurat
Seurat object with @dr$tsne slot and @ident
identMatch
a named vector for renaming the clusters, by default it's ataset$cluster_annotation
Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.
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View source: R/Arthurs_cell_annotation_functions.R
Description
plot the cell cluster one by one on TSNE, using all the single cells rather than cells in dataset@sc_mat
Usage
1 2 | plot_scMeta_NotOnlySuperCell_byIdent(dataset, Exp_Seurat,
identMatch = NULL, main = "annotated cluster", addtext = T)
|
Arguments
dataset |
dataset object with sc_mat slot |
Exp_Seurat |
Seurat object with @dr$tsne slot and @ident |
identMatch |
a named vector for renaming the clusters, by default it's ataset$cluster_annotation |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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