celltype_annotation_by_cluster: match scRNA clusters with bulk annotation
In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline
Description
Usage
Arguments
Value
View source: R/Arthurs_cell_annotation_functions.R
Description
label each scRNA cluster in Exp_Seurat@ident as a bulk cell type, if more than min_percent of the
cells from the cluster has certain bulk cell label.
Usage
1
celltype_annotation_by_cluster(dataset, min_percent = 0.5)
Arguments
dataset
dataset object output by metadata_reprocessing
min_percent
minimun percentage for a cell cluster being annotated as certain cell type
Value
an data_set object
Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.
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Description Usage Arguments Value
View source: R/Arthurs_cell_annotation_functions.R
Description
label each scRNA cluster in Exp_Seurat@ident as a bulk cell type, if more than min_percent of the cells from the cluster has certain bulk cell label.
Usage
1 | celltype_annotation_by_cluster(dataset, min_percent = 0.5)
|
Arguments
dataset |
dataset object output by metadata_reprocessing |
min_percent |
minimun percentage for a cell cluster being annotated as certain cell type |
Value
an data_set object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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