metadata_reprocessing: match bulk annotation with scRNA groups

In Arthurhe/Lightbulb: single cell RNA-seq analysis suite/pipeline

Description

For a given meta data label, this function calculate with annotated cell type present in the meta data label, and which meta data label is irrelavant for the current dataset. The filtering process ensure that only ident group that present in at least one of the category will be kept. presence of a group means that more than filtering_threshold

Usage

metadata_reprocessing(dataset, Exp_Seurat, relavant_cells,
  filtering_based_on_category = NULL, filtering_threshold = 0.01)

Arguments

dataset	dataset object output by secondary_cor
Exp_Seurat	Seurat object with @metadata
relavant_cells	A vector cell position id indicating the cells that's relveant for the analysis.
filtering_based_on_category	The type of category that filtering will happen on,must be present in [e-mail]

Value

an data_set object

Arthurhe/Lightbulb documentation built on April 13, 2020, 5:12 p.m.