MDST_plot: MDST Network visualization with igraph

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

MDST Network visualization with igraph

Description

MDST Network visualization with igraph

Usage

MDST_plot(
  MDST,
  node.color = NULL,
  group = NULL,
  weight = T,
  node.label.color = "black",
  edge.color = "black",
  arrow.size = 0.4,
  node.size = NULL,
  frame.color = NULL,
  edge.label = NULL,
  edge.width = 2,
  edge.label.color = "black",
  edge.label.loc = 0.5,
  edge.label.adjust = 0.1,
  edge.label.cex = 0.8,
  arrow.width = 1.5,
  my_layout = layout_as_tree,
  rescale = F,
  node.self = F,
  ...
)

Arguments

MDST	MDST Network.
node.color	The fill color of the vertex.
group	The vertex labels.
weight	Logical. Whether to determine the width of the edges. according to the weight.Default:TRUE
node.label.color	The color of the node labels.
edge.color	The color of the edges.
arrow.size	Size of arrows.
node.size	Size of nodes.
frame.color	The color of the frame of the vertices.
edge.label	The edge labels.
edge.width	Width of each edge.
edge.label.color	The color of the edge labels.
edge.label.loc	The location of edge labels, if edge.label.loc = 0, edge label locate at the same position of start node, if edge.label.loc = 1, edge label locate at the same position of end node, if edge.label.loc = 0.5, edge label locate at the middle of start and end node.Default:0.5.
edge.label.adjust	edge label will be adjusted in the x-axis direction.Default:0.1.
edge.label.cex	The font size for the edge labels.Default:0.8.
arrow.width	The width of the arrows. Default:layout_as_tree
my_layout	Either a function or a numeric matrix. It specifies how the vertices will be placed on the plot.
rescale	Logical. Whether to rescale the coordinates to the [-1,1]x[-1,1](x[-1,1]) interval. This parameter is not implemented for tkplot.Default:FALSE, the layout will NOT be rescaled.
node.self	Logical. Whether to draw an arrow pointing to the vertice itself.Default:FALSE.
...	Other parameter of plot.igraph.

See Also

plot.igraph,igraph.plotting

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.