monocle_workflow: Dimensionality reduction, classification and pseudotime...

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Dimensionality reduction, classification and pseudotime analysis of the score matrix.

Description

Dimensionality reduction, classification and pseudotime analysis of the score matrix.

Usage

monocle_workflow(seurat, method = "DDRTree", ncenter = 5, ...)

Arguments

seurat	Seurat object.
method	A character string specifying the algorithm to use for dimensionality reduction.
...	Other parameters of reduceDimension and orderCells functions in monocle package.

Value

CellDataSet object with dimensionality reduction, classification and pseudotime analysis results.

See Also

reduceDimension,orderCells

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.