get_seq_conservation: Get sequence conservation of each site.

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Get sequence conservation of each site.

Description

Get sequence conservation of each site.

Usage

get_seq_conservation(
  seqs = NULL,
  alignment_file = NULL,
  type = c("DNA", "RNA", "AA"),
  group = NULL,
  ...
)

Arguments

seqs	input sequence alignment result, for DNA/RNA/protein sequences, DNAStringSet/RNAStringSet/AAStringSet or character class were required. All sequences must have the same length.
alignment_file	The path of input sequence alignment result.
type	Character. One of DNA, RNA and AA.
group	Vector. Grouping information of each sequence. The length of group vector is consistent with the number of sequences.
...	Other parameters of consensusMatrix.

Value

sequence conservation matrix of each site.

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.