combine_alignment: Combine multiple alignment results according to the distance...

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Combine multiple alignment results according to the distance of each alignment result.

Description

Combine multiple alignment results according to the distance of each alignment result.

Usage

combine_alignment(
  alignment_list = NULL,
  alignment_file = NULL,
  group_dist = NULL,
  type = "AA",
  tree = F,
  ...
)

Arguments

alignment_list	A list containing multiple alignment results.
alignment_file	A vector containing paths of multiple alignment results.
group_dist	Dist. This parameter could be applied to import the calculated distance between groups. If NULL, distance between groups will be calculated automatically.
type	Sequences type. One of DNA, RNA and AA.
tree	Logical. If TRUE, also return hclust tree of each family. Default: FALSE.
...	Other parameter of group_alignment

Value

multiple alignment results with hclust tree

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.