cluster_scatter: Scatter plot for genes

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Scatter plot for genes

Description

Scatter plot for alignment result after dimensionality reduction.

Usage

cluster_scatter(
  dat,
  mapping = "umap",
  group = NULL,
  size = 1,
  text = T,
  text_group = NULL,
  text_color = "black",
  text_size = 5,
  segment_size = 0.75,
  text_face = "bold"
)

Arguments

dat	Seurat/monocle object.
mapping	Name of reduction to pull cell embeddings for. Only for Seurat object.
group	Factor. Grouping information of each gene. Must contain the same length of genes.
size	Numeric. The point size of scatter plot. Default:1.
text	Logical. If TRUE, gene family will be labeled at scatter plot. Default:T.
text_group	Factor. Grouping information of labeled gene family. Must contain the same length of genes.
text_color	Character. Colors of labeled gene family. Default:"black".
text_size	Numeric. The gene family text size of scatter plot. Default:5.
segment_size	Numeric. The segment size of scatter plot. Default:0.75.
text_face	Character. fontface of labeled gene family.

Value

Scatter plot for genes.

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.