find_Specific_site: Find specific sites for each gene family.

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Find specific sites for each gene family.

Description

Find specific sites for each gene family.

Usage

find_Specific_site(
  seurat,
  ident = NULL,
  only.pos = TRUE,
  logfc = 0.1,
  min.pct = 0,
  ...
)

Arguments

seurat	Seurat object.
ident	Character. One of colnames of Seurat object metadata. If NULL, use the active.ident of the Seurat object as the grouping information.
only.pos	Only return positive marker site. Default:TRUE.
logfc	Limit testing to genes which show, on average, at least X-fold difference (log-scale) between the two groups of cells. Default:1.
min.pct	only test genes that are detected in a minimum fraction of min.pct cells in either of the two populations. Meant to speed up the function by not testing genes that are very infrequently expressed. Default: 0.25.
...	Other parameters of Seurat::FindAllMarkers.

Value

Matrix containing a ranked list of putative markers, and associated statistics (p-values, ROC score, etc.)

See Also

FindAllMarkers

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.