multiple_group_scatter: Scatter plot for genes belonging to multiple gene families

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Scatter plot for genes belonging to multiple gene families

Description

Scatter plot for genes belonging to multiple gene families, Genes belonging to multiple families will be given multiple colors

Usage

multiple_group_scatter(
  dat,
  my_color,
  mapping = "umap",
  group = NULL,
  gene = NULL,
  background_color = "grey80",
  text = T,
  text_group = NULL,
  text_face = "bold",
  text_color = "grey60",
  text_size = 5,
  legend = T,
  point_size = 1,
  segment_size = 1,
  multiple_point_size = 0.3
)

Arguments

dat	Seurat/monocle object.
my_color	Gene families colors. Only gene belonging to multiple gene families will be colored.
mapping	Name of reduction to pull gene embedding for. Only for Seurat object.
group	Factor. Grouping information of each gene. Must contain the same length of genes.
gene	Character. Must contain duplicate gene names.
background_color	Colors for gene NOT belonging to multiple gene families.
text	Logical. If TRUE, gene family will be labeled at scatter plot. Default:T.
text_group	Factor. Grouping information of labeled gene family. Must contain the same length of genes.
text_face	Character. fontface of labeled gene family.
text_color	Character. Colors of labeled gene family. Default:"black".
text_size	Numeric. The gene family text size of scatter plot. Default:5.
legend	Logical. If TRUE, add a legend to the picture. Default:TRUE.
point_size	Numeric. The background point size of scatter plot. Default:1.
segment_size	Numeric. The segment size of scatter plot. Only for monocle object. Default:1.
multiple_point_size	Numeric. Point size of gene belonging to multiple gene families. Default:0.3.

Value

Scatter plot for genes belonging to multiple gene families.

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.