get_bits: Get bits of each site.

In Busydog1990/genepro: CProtMEDIAS: clustering of amino acid sequences encoded by gene families by MErging and DIgitizing Aligned Sequences

Get bits of each site.

Description

Get bits of each site.

Usage

get_bits(seq_prob, type = c("DNA", "RNA", "AA"), freq = T, base = T, prob = F)

Arguments

seq_prob	Seurat object.
type	Character. One of DNA, RNA and AA.
freq	Logical. If TRUE, the final result will be multiplied by the ratio of valid characters. Default:TRUE.
base	Logical. If TRUE, only keep the score of AA_STANDARD/DNA_BASES/RNA_BASES for protein/DNA/RNA sequences. Default:TRUE.
prob	Logical. If TRUE, return seq prob of each site. Default:FALSE.

Value

bits/seq prob of each site

Busydog1990/genepro documentation built on July 20, 2023, 6:03 a.m.