Files in CaronLab/MHCIatlas
Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

.Rbuildignore

.Rproj.user/71971F0B/cpp-definition-cache

.Rproj.user/71971F0B/pcs/files-pane.pper

.Rproj.user/71971F0B/pcs/source-pane.pper

.Rproj.user/71971F0B/pcs/windowlayoutstate.pper

.Rproj.user/71971F0B/pcs/workbench-pane.pper

.Rproj.user/71971F0B/persistent-state

.Rproj.user/71971F0B/rmd-outputs

.Rproj.user/71971F0B/saved_source_markers

.Rproj.user/71971F0B/sources/s-8A82CB28/lock_file

.Rproj.user/shared/notebooks/patch-chunk-names

DESCRIPTION

MHCIatlas.Rproj

NAMESPACE

R/AnalCorrHuman.R R/BasicAnalHuman.R R/BasicAnalMouse.R R/ComparePeaksHuman.R R/ConservationHuman.R R/ConservationMouse.R R/GetHumanMHCIdata.R R/GetMouseMHCIdata.R R/HousekeepersHuman.R R/MakeCorrHuman.R R/MakeCorrMouse.R R/PlotsHumanProtCorr.R R/PlotsMouseProtCorr.R R/ProgressBar.R R/SigCorrsHuman.R R/SigCorrsMouse.R R/SupplFigure10.R R/SupplFigure2.R R/SupplFigure3.R R/SupplFigure4.R R/SupplFigure5.R R/SupplFigure6.R R/getAccessions.R R/install_dependencies.R R/mkFigure2.R R/mkFigure3.R R/mkFigure4.R R/mkFigure5.R R/mkFigure6.R R/mkHumanConnectivityMap.R R/mkMouseConnectivityMap.R

build/vignette.rds

inst/doc/MHCIatlas_user_guide.R inst/doc/MHCIatlas_user_guide.Rmd

inst/doc/MHCIatlas_user_guide.html

inst/extdata/2020-04-08_files.combined_5percFDR_Mouse.txt

inst/extdata/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_median_tpm.gct

inst/extdata/HumanHLAatlas_reprocessed1.csv

inst/extdata/HumanHLAatlas_reprocessed2.csv

inst/extdata/HumanHLAatlas_reprocessed3.csv

inst/extdata/HumanHLAatlas_reprocessed4.csv

inst/extdata/HumanHLAatlas_reprocessed5.csv

inst/extdata/Suppl_Table_S1_all_proteins_Geiger_et_al_2013.txt

inst/extdata/Table_EV1_Genes.csv

inst/extdata/conservation_analysis_mouse_default.csv

inst/extdata/human_GOterms.csv

inst/extdata/human_conservation_default.csv

inst/extdata/mouse_GOterms.csv

inst/extdata/mouse_conservation_default.csv

inst/extdata/mouse_tpm.txt

man/AnalCorrHuman.Rd man/BasicAnalHuman.Rd man/BasicAnalMouse.Rd man/ComparePeaksHuman.Rd man/ConservationHuman.Rd man/ConservationMouse.Rd man/GetHumanMHCIdata.Rd man/GetMouseMHCIdata.Rd man/HousekeepersHuman.Rd man/MakeCorrHuman.Rd man/MakeCorrMouse.Rd man/PlotsHumanProtCorr.Rd man/PlotsMouseProtCorr.Rd man/ProgressBar.Rd man/SigCorrsHuman.Rd man/SigCorrsMouse.Rd man/SupplFigure10.Rd man/SupplFigure2.Rd man/SupplFigure3.Rd man/SupplFigure4.Rd man/SupplFigure5.Rd man/SupplFigure6.Rd man/getAccessions.Rd man/mkFigure2.Rd man/mkFigure3.Rd man/mkFigure4.Rd man/mkFigure5.Rd man/mkFigure6.Rd man/mkHumanConnectivityMap.Rd man/mkMouseConnectivityMap.Rd vignettes/MHCIatlas_user_guide.Rmd

CaronLab/MHCIatlas documentation built on March 10, 2021, 12:38 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

CaronLab/MHCIatlas
Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Files in CaronLab/MHCIatlas
Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

R Package Documentation

Browse R Packages

We want your feedback!

CaronLab/MHCIatlas Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Files in CaronLab/MHCIatlas Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

R Package Documentation

Browse R Packages

We want your feedback!

CaronLab/MHCIatlas
Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.

Files in CaronLab/MHCIatlas
Package to reproduce data analysis and further explore the data depicted by Kubiniok et al. 2021 in 'Global Analysis of the Mammalian MHC class I Immunopeptidome at the Organism-Wide Scale'.