bamToPileup: Gets pileup from bam over positions.
In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.
bamToPileup R Documentation
Gets pileup from bam over positions.
Description
Gets pileup from bam over positions.
Usage
bamToPileup(
bam,
fasta,
positions,
index,
Rdirectory,
BQoffset = 33,
samtoolsVersion = "samtools 1.9"
)
ChristofferFlensburg/superFreq documentation built on July 8, 2024, 7:51 a.m.
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| bamToPileup | R Documentation |
Gets pileup from bam over positions.
Description
Gets pileup from bam over positions.
Usage
bamToPileup(
bam,
fasta,
positions,
index,
Rdirectory,
BQoffset = 33,
samtoolsVersion = "samtools 1.9"
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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