getMoreVEPinfo: Import more information about the variants
In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.
getMoreVEPinfo R Documentation
Import more information about the variants
Description
Import more information about the variants
Usage
getMoreVEPinfo(variants, plotDirectory, genome = "hg19", cosmicDirectory = "")
Arguments
variants
variants: The variants
plotDirectory
character: The plot directory from the analyse call.
Details
Extract almost all the information from the VEP run, and cross-checks with COSMIC data as well.
getCosmicCounts is called by this function, see details of that for requirements.
ChristofferFlensburg/superFreq documentation built on Nov. 15, 2023, 6:15 a.m.
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| getMoreVEPinfo | R Documentation |
Import more information about the variants
Description
Import more information about the variants
Usage
getMoreVEPinfo(variants, plotDirectory, genome = "hg19", cosmicDirectory = "")
Arguments
variants |
variants: The variants |
plotDirectory |
character: The plot directory from the analyse call. |
Details
Extract almost all the information from the VEP run, and cross-checks with COSMIC data as well. getCosmicCounts is called by this function, see details of that for requirements.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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