plotColourScatter: A better version of plot

In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.

A better version of plot

Description

A better version of plot

Usage

plotColourScatter(
  x,
  y,
  xlab = "",
  ylab = "",
  col = "defaultBlue",
  main = "cor",
  add = F,
  cex = 1,
  showDensity = T,
  ...
)

Arguments

x	Numeric. The x coordinates.
y	Numeric. The y coordinates.
add	boolean. If adding the plot onto whatever is alrady there. Essentially turns plot() it into points().
showDensity	Boolean. Adds a gradient through cyan and green in dense regions. Default TRUE.
...	Remaining parameters are passed to plot(...), or to points(...) if add.

Details

This plotting function does the same as plot() in essence, but the default looks nicer than the black rings, and overplotting smoothly transitions into heatmap representation. The price is that pdfs are a bit larger than from a plot() call.

Examples

x = rnorm(10000, ((1:10000)/10000)^2, 0.01)
y = rnorm(10000, ((1:10000)/10000)^3, 0.01)
plotColourScatter(x, y)

ChristofferFlensburg/superFreq documentation built on Nov. 15, 2023, 6:15 a.m.