chrToX: convert chromsome and position to the single genomic...
In ChristofferFlensburg/superFreq: Calls and tracks CNAs, SNVs and clones over multiple cancer exomes.
View source: R/getVariantsByIndividual.R
chrToX R Documentation
convert chromsome and position to the single genomic coordinate x
Description
convert chromsome and position to the single genomic coordinate x
Usage
chrToX(chr, bp, genome = "hg19")
Arguments
chr
character: The chromosome. Both 'chr1' and '1' works. 'Chr1' does not.
bp
integer: the position on the chromosome.
genome
character: the genome, such as 'hg19', 'hg38' or 'mm10'. Default 'hg19'.
Details
convert chromsome and position to the single genomic coordinate x.
Examples
xToPos(1e9)
xToPos(1e9, genome='mm10')
ChristofferFlensburg/superFreq documentation built on Nov. 15, 2023, 6:15 a.m.
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View source: R/getVariantsByIndividual.R
| chrToX | R Documentation |
convert chromsome and position to the single genomic coordinate x
Description
convert chromsome and position to the single genomic coordinate x
Usage
chrToX(chr, bp, genome = "hg19")
Arguments
chr |
character: The chromosome. Both 'chr1' and '1' works. 'Chr1' does not. |
bp |
integer: the position on the chromosome. |
genome |
character: the genome, such as 'hg19', 'hg38' or 'mm10'. Default 'hg19'. |
Details
convert chromsome and position to the single genomic coordinate x.
Examples
xToPos(1e9)
xToPos(1e9, genome='mm10')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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